Example Workflows
-------------------

A collection of tutorials to help understand the main features of QMzyme.

.. toctree::
   :maxdepth: 2

   Getting Started
   QM-only Calculation
   QMQM2 Calculation
   QMxTB Calculation
   Ligand Parameterization
   Working with Trajectories
   QMzyme  Serialization
   Molecule Replacement Using QMzyme
   Verifying Optimized Structures

Cookbook
-------------------

A collection of "recipes" to perform specific tasks in QMzyme. 

.. toctree::
   :maxdepth: 2

   Inspecting Model Architecture
   Manipulating QMzymeRegion
   Pymol Visualization
   Using Various SelectionScheme Classes